README · Installation · Tutorial · Data preparation
Install the QIIME 2 2026.10 distribution by following the instructions at install.qiime2.org; they create a conda environment named rachis-qiime2-2026.10.
Then add sylph and the two plugins to that environment with this repository’s extras file:
wget https://raw.githubusercontent.com/gregcaporaso/q2-confluence-tutorial/main/environment-files/q2-confluence-tutorial-extras.yml
conda env update \
-n rachis-qiime2-2026.10 \
--file q2-confluence-tutorial-extras.yml
conda activate rachis-qiime2-2026.10
qiime dev refresh-cache
qiime confluence --help
qiime sylph --help