q2book

Preface

Front Matter

1. Reading this book

Microbiome Bioinformatics with QIIME 2

2. Getting started with using QIIME 2
3. An interactive introduction to QIIME 2
4. Metadata in QIIME 2
5. Importing data into QIIME 2
6. Demultiplexing a sequencing run
7. Denoising demultiplexed sequencing data
8. Taxonomic annotation and analysis of sequences
9. Alpha diversity
10. Beta diversity
11. Normalization of Feature Tables

Back Matter

12. Appendix: Examples illustrating importing data into QIIME 2
13. Appendix: Advanced metadata formatting
14. Appendix: A brief introduction to methods in microbiome science
15. Appendix: History of the QIIME platform
16. Glossary

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Denoising demultiplexed sequencing data

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By J Gregory Caporaso
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