q2book

Preface

Front Matter

1. Reading this book

Microbiome Bioinformatics with QIIME 2

2. Getting started with using QIIME 2
3. An interactive introduction to QIIME 2
4. Metadata in QIIME 2
5. Importing data into QIIME 2
6. Demultiplexing a sequencing run
7. Denoising demultiplexed sequencing data
8. Taxonomic annotation and analysis of sequences
9. Alpha diversity
10. Beta diversity
11. Normalization of Feature Tables

Back Matter

12. Appendix: Examples illustrating importing data into QIIME 2
13. Appendix: Advanced metadata formatting
14. Appendix: A brief introduction to methods in microbiome science
15. Appendix: History of the QIIME platform
16. Glossary

Powered by Jupyter Book

Taxonomic annotation and analysis of sequences

8. Taxonomic annotation and analysis of sequences¶

previous

7. Denoising demultiplexed sequencing data

next

9. Alpha diversity

By J Gregory Caporaso
© Copyright 2020-2021.