q2book
Preface
Front Matter
1. Reading this book
Microbiome Bioinformatics with QIIME 2
2. Getting started with using QIIME 2
3. An interactive introduction to QIIME 2
4. Metadata in QIIME 2
5. Importing data into QIIME 2
6. Demultiplexing a sequencing run
7. Denoising demultiplexed sequencing data
8. Taxonomic annotation and analysis of sequences
9. Alpha diversity
10. Beta diversity
11. Normalization of Feature Tables
Back Matter
12. Appendix: Examples illustrating importing data into QIIME 2
13. Appendix: Advanced metadata formatting
14. Appendix: A brief introduction to methods in microbiome science
15. Appendix: History of the QIIME platform
16. Glossary
Index
A
|
D
|
F
|
I
|
M
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
|
V
A
action
artifact
D
data format
data provenance
data type
decentralized data provenance
F
feature
I
input
M
method
O
output
P
parameter
pipeline
plugin
primitive type
provenance
Q
qza
qzv
R
result
S
sample
semantic type
Semantic types shouldn’t be confused with
T
type
U
UUID
V
view
visualization
visualizer
